All

Microorganism

Code

Library

Type

Selected

preset_ARChetype Disease CRF_Covid

preset_ARChetype Disease CRF_Dengue

preset_ARChetype Disease CRF_Mpox

preset_ARChetype Disease CRF_Mpox Pregnancy and Paediatric

preset_ARChetype Disease CRF_H5Nx

preset_ARChetype Syndromic CRF_Arbovirus

preset_ARChetype Syndromic CRF_ARI

preset_Recommended Outcomes_Dengue

preset_ARChetype Syndromic CRF_Encephalitis

preset_ARChetype Disease CRF_Chikungunya

preset_ARChetype Syndromic CRF_VHF

Comment

Value

Achromobacter

91620006

SNOMED

bacteria

1

Achromobacter xylosoxidans

413424009

SNOMED

bacteria

2

Acinetobacter

7757008

SNOMED

bacteria

3

Acinetobacter anitratus

82550008

SNOMED

bacteria

1

4

Acinetobacter baumannii

91288006

SNOMED

bacteria

5

Acinetobacter calcoaceticus

413398000

SNOMED

bacteria

6

Acinetobacter calcoaceticus-baumannii complex

113376007

SNOMED

bacteria

7

Acinetobacter johnsonii

252000

SNOMED

bacteria

8

Acremonium

63996006

SNOMED

fungi

9

Actinomyces israelii

46369004

SNOMED

bacteria

10

Adenoviridae

424470006

SNOMED

virus

1

1

11

Aeromonas

88529008

SNOMED

bacteria

12

Aggregatibacter

441718002

SNOMED

bacteria

13

Anaerobic bacteria

59343002

SNOMED

bacteria

14

Ancylostoma duodenale

81559006

SNOMED

parasite, helminth

15

Andes orthohantavirus

442001008

SNOMED

virus

16

Arenaviridae

243624009

SNOMED

virus

17

Ascaris lumbricoides

19061001

SNOMED

parasite, helminth

18

Aspergillus

2429008

SNOMED

fungi

1

19

Aspergillus flavus

66821001

SNOMED

fungi

20

Aspergillus fumigatus

32684000

SNOMED

fungi

21

Aspergillus fumigatus complex

719029007

SNOMED

fungi

22

Aspergillus niger

89354002

SNOMED

fungi

23

Aspergillus terreus

26406003

SNOMED

fungi

24

Aspergillus versicolor

48315007

SNOMED

fungi

25

Astroviridae

424055004

SNOMED

virus

26

Avian Influenza A H5N1

772827006

SNOMED

virus

27

Avian Influenza A H7N9

609444009

SNOMED

virus

28

Bacillus

44762009

SNOMED

bacteria

29

Bacillus anthracis

21927003

SNOMED

bacteria

30

Bacillus cereus

84408007

SNOMED

bacteria

31

Bacteroides fragilis

55247009

SNOMED

bacteria

32

Bacteroides thetaiotaomicron

34236001

SNOMED

bacteria

33

Blastocystis hominis

28923009

SNOMED

parasite, Stramenopiles

34

Blastomyces dermatitidis

65615007

SNOMED

fungi

35

Bocavirus (Genus)

430902006

SNOMED

virus

36

Bordetella pertussis

5247005

SNOMED

bacteria

37

Brugia malayi

112443002

SNOMED

parasite, helminth

38

Bunyaviridae (Family)

243615000

SNOMED

virus

39

Burkholderia

414324002

SNOMED

bacteria

40

Burkholderia cenocepacia

416941006

SNOMED

bacteria

41

Burkholderia cepacia

113669008

SNOMED

bacteria

42

Burkholderia pseudomallei

116399000

SNOMED

bacteria

43

Caliciviridae (Family)

243627002

SNOMED

virus

44

Campylobacter

35408001

SNOMED

bacteria

1

45

Candida

3265006

SNOMED

fungi

1

46

Candida albicans

53326005

SNOMED

fungi

47

Candida auris

3.49E+12

SNOMED

fungi

48

Candida dubliniensis

115952006

SNOMED

fungi

49

Candida glabrata

444877006

SNOMED

fungi

50

Candida inconspicua

283871001

SNOMED

fungi

51

Candida orthopsilosis

3.69E+12

SNOMED

fungi

52

Candida parapsilosis

61302002

SNOMED

fungi

53

Candida tropicalis

47885008

SNOMED

fungi

54

Chlamydia

16241000

SNOMED

bacteria

55

Chlamydophila pneumoniae

103514009

SNOMED

bacteria

56

Chryseobacterium indologenes

113549008

SNOMED

bacteria

57

Citrobacter

75972000

SNOMED

bacteria

58

Citrobacter braakii

114262000

SNOMED

bacteria

59

Citrobacter freundii

6265002

SNOMED

bacteria

60

Citrobacter koseri

114264004

SNOMED

bacteria

61

Clavispora lusitaniae

50164000

SNOMED

fungi

62

Clonorchis sinensis

36559008

SNOMED

parasite, helminth

63

Clostridium botulinum

13080008

SNOMED

bacteria

64

Clostridium difficile

5933001

SNOMED

bacteria

65

Clostridium difficile (toxin positive)

736050006

SNOMED

bacteria

66

Clostridium tetani

30917009

SNOMED

bacteria

67

Coagulase negative Staphylococcus

116197008

SNOMED

bacteria

1

68

Coccidioides

8672004

SNOMED

fungi

69

Coccidioides immitis

23439005

SNOMED

fungi

70

Coliform bacteria

77309002

SNOMED

bacteria

71

Coronaviridae (Family)

243607003

SNOMED

virus

72

Corynebacterium

77086004

SNOMED

bacteria

73

Corynebacterium amycolatum

113611002

SNOMED

bacteria

74

Corynebacterium pseudodiphtheriticum

12050008

SNOMED

bacteria

75

Corynebacterium pseudotuberculosis

55084001

SNOMED

bacteria

76

Corynebacterium striatum

63815007

SNOMED

bacteria

77

Corynebacterium ulcerans

103428000

SNOMED

bacteria

78

Corynebacterium xerosis

27101006

SNOMED

bacteria

79

Crimean-Congo Hemorrhagic Fever virus (CCHF)

79875007

SNOMED

virus

1

1

80

Cryptococcus

17579001

SNOMED

bacteria

1

81

Cryptococcus gattii

450862004

SNOMED

fungi

82

Cryptococcus neoformans

67168003

SNOMED

fungi

84

Cryptosporidium

83821001

SNOMED

parasite, protozoa

85

Cryptosporidium hominis

417722006

SNOMED

parasite, protozoa

86

Cryptosporidium parvum

51504002

SNOMED

parasite, protozoa

87

Curvularia lunata

33165007

SNOMED

fungi

89

Cyclospora

103560006

SNOMED

parasite, protozoa

90

Cyclospora cayetanensis

103561005

SNOMED

parasite, protozoa

91

Cytomegalovirus

407444007

SNOMED

virus

1

92

Delftia

416493002

SNOMED

bacteria

93

Delftia acidovorans

20432002

SNOMED

bacteria

94

Deltavirus

83617006

SNOMED

virus

95

Dengue virus

34348001

SNOMED

virus

1

1

1

1

96

Dermabacter

413976002

SNOMED

bacteria

97

Diphtheroid

54642001

SNOMED

bacteria

98

Diphyllobothrium latum

40406002

SNOMED

parasite, helminth

100

Dracunculus medinensis

3824001

SNOMED

parasite, helminth

101

Ebola virus

424206003

SNOMED

virus

1

1

102

Echinococcus granulosus

243672005

SNOMED

parasite, helminth

103

Eggerthella

414075007

SNOMED

bacteria

104

Elizabethkingia

426244005

SNOMED

bacteria

105

Entamoeba

38324000

SNOMED

parasite, protozoa

1

106

Entamoeba dispar

415987008

SNOMED

parasite, protozoa

107

Entamoeba histolytica

4716008

SNOMED

parasite, protozoa

108

Enteric bacteria

106544002

SNOMED

bacteria

109

Enterobacter

58683007

SNOMED

bacteria

1

110

Enterobacter aerogenes

62592009

SNOMED

bacteria

111

Enterobacter asburiae

33115003

SNOMED

bacteria

112

Enterobacter bugandensis

1.13611E+14

SNOMED

bacteria

113

Enterobacter cloacae

14385002

SNOMED

bacteria

114

Enterobacter cloacae complex

414102007

SNOMED

bacteria

115

Enterobacter hormaechei

114454006

SNOMED

bacteria

116

Enterobacter kobei

114456008

SNOMED

bacteria

117

Enterobacteriaceae

106544002

SNOMED

bacteria

118

Enterobius vermicularis

55008000

SNOMED

parasite, helminth

119

Enterococcus

2785000

SNOMED

bacteria

1

120

Enterococcus avium

87875008

SNOMED

bacteria

121

Enterococcus faecalis

78065002

SNOMED

bacteria

122

Enterococcus faecium

90272000

SNOMED

bacteria

123

Enterococcus raffinosus

103437000

SNOMED

bacteria

124

Enterovirus (genus Enterovirus)

243633006

SNOMED

virus

125

Epidermophyton

112403007

SNOMED

fungi

126

Escherichia

64735005

SNOMED

bacteria

127

Escherichia coli

112283007

SNOMED

bacteria

1

128

Exophiala dermatitidis

20586007

SNOMED

fungi

129

Falciformispora senegalensis (formerly Leptosphaeria senegalensis)

48529007

SNOMED

fungi

130

Filoviridae (Family)

407325004

SNOMED

virus

131

Flaviviridae (Family)

243602009

SNOMED

virus

1

132

Francisella tularensis

51526001

SNOMED

bacteria

133

Fungi

414561005

SNOMED

fungi

134

Fusarium

35238009

SNOMED

fungi

135

Fusobacterium nucleatum

32763000

SNOMED

bacteria

136

Genus Marburgvirus

424421007

SNOMED

virus

1

1

137

Giardia

61419001

SNOMED

parasite, protozoa

138

Giardia intestinalis

78181009

SNOMED

parasite, protozoa

139

Giardia lamblia

78181009

SNOMED

parasite, protozoa

140

Gram-Negative Bacillus

87172008

SNOMED

bacteria

141

Gram-Positive Bacillus

83514008

SNOMED

bacteria

142

Gram-Positive Coccus

59206002

SNOMED

bacteria

143

Granulicatella adiacens

113713009

SNOMED

bacteria

144

Haemophilus

71268004

SNOMED

bacteria

145

Haemophilus ducreyi

64889004

SNOMED

bacteria

146

Haemophilus influenzae

44470000

SNOMED

bacteria

1

147

Haemophilus parainfluenzae

51593004

SNOMED

bacteria

148

Hafnia alvei

76694001

SNOMED

bacteria

149

Hantavirus

49445003

SNOMED

virus

1

150

Helicobacter pylori

80774000

SNOMED

bacteria

151

Hendra virus

115510008

SNOMED

virus

152

Hepadnaviridae

422951006

SNOMED

virus

153

Hepatitis A virus

32452004

SNOMED

virus

1

154

Hepatitis B virus

81665004

SNOMED

virus

1

155

Hepatitis C virus

62944002

SNOMED

virus

1

156

Hepatitis D virus

83617006

SNOMED

virus

157

Hepatitis E virus

78475006

SNOMED

virus

158

Herpesviridae

128377001

SNOMED

virus

159

Histoplasma

81951003

SNOMED

fungi

160

Histoplasma capsulatum

56596006

SNOMED

fungi

161

Human Herpesvirus 1 (HHV1, Herpes simplex virus 1, HSV1)

407451003

SNOMED

virus

1

162

Human Herpesvirus 2 (HHV2, Herpes Simplex virus 2, HSV2)

407450002

SNOMED

virus

1

163

Human Herpesvirus 3 (Varicella-zoster virus, VZV)

19551004

SNOMED

virus

1

1

1

164

Human Herpesvirus 4 (Epstein-Barr virus, EBV)

40168006

SNOMED

virus

1

165

Human Herpesvirus 5 (Cytomegalovirus humanbeta5, hCMV)

243579005

SNOMED

virus

166

Human Herpesvirus 6 (Roseola infantum virus)

103528003

SNOMED

virus

167

Human Immunodeficiency Virus (HIV)

19030005

SNOMED

virus

1

168

Human Immunodeficiency virus type 1 (HIV-1)

89293008

SNOMED

virus

169

Human Immunodeficiency virus type 2 (HIV-2)

36115006

SNOMED

virus

170

Human Metapneumovirus (hMPV)

416730002

SNOMED

virus

171

Human Parainfluenza virus

407498006

SNOMED

virus

172

Human Parainfluenza virus 1

407489008

SNOMED

virus

173

Human Parainfluenza virus 2

407491000

SNOMED

virus

174

Human Parainfluenza virus 3

407493002

SNOMED

virus

175

Human Parainfluenza virus 4

89117003

SNOMED

virus

176

Human Parvovirus b19

63603005

SNOMED

virus

177

Human Respiratory Syncytial virus (RSV)

6415009

SNOMED

virus

178

Human bocavirus

446373002

SNOMED

virus

179

Human coronavirus

84101006

SNOMED

virus

180

Hymenolepis diminuta

23895005

SNOMED

parasite, helminth

181

Hymenolepis nana

74311004

SNOMED

parasite, helminth

182

Influenza A H1N1

442352004

SNOMED

virus

1

1

1

183

Influenza A H5N1

772827006

SNOMED

virus

1

1

1

184

Influenza A H5N8

708527000

SNOMED

virus

1

1

1

185

Influenza A H7N7

715346008

SNOMED

virus

1

1

1

186

Influenza A H7N9

609444009

SNOMED

virus

1

1

1

187

Influenza A virus

407479009

SNOMED

virus

1

1

1

188

Influenza B virus

407480007

SNOMED

virus

1

1

1

189

Influenza virus

725894000

SNOMED

virus

1

1

1

1

190

Isospora belli

12633005

SNOMED

parasite, protozoa

191

Japanese encephalitis virus (JEV)

243603004

SNOMED

virus

1

192

Junin virus

26352009

SNOMED

virus

1

193

Klebsiella

75032006

SNOMED

bacteria

1

194

Klebsiella aerogenes

62592009

SNOMED

bacteria

195

Klebsiella oxytoca

40886007

SNOMED

bacteria

196

Klebsiella pneumoniae

56415008

SNOMED

bacteria

197

Klebsiella pneumoniae, ESBL

409801009

SNOMED

bacteria

198

Klebsiella variicola

431976004

SNOMED

bacteria

199

Lacticaseibacillus rhamnosus

113798001

SNOMED

bacteria

200

Lassa virus

85944001

SNOMED

virus

1

1

1

201

Legionella

7527002

SNOMED

bacteria

1

202

Legionella pneumophila

80897008

SNOMED

bacteria

203

Leishmania

79357004

SNOMED

parasite, protozoa

204

Leishmania Viannia

712933004

SNOMED

parasite, protozoa

205

Leishmania braziliensis

83196002

SNOMED

parasite, protozoa

206

Leishmania braziliensis complex

7400004

SNOMED

parasite, protozoa

207

Leishmania donovani complex

79781008

SNOMED

parasite, protozoa

208

Leptospira interrogans

116401006

SNOMED

bacteria

1

209

Lichthiemia

734206002

SNOMED

fungi

210

Listeria monocytogenes

36094007

SNOMED

bacteria

211

Lomentospora prolificans (Scedosporium prlificans)

69564000

SNOMED

fungi

212

Lujo virus

450622000

SNOMED

virus

1

213

Lymphocytic choriomeningitis virus (LCMV)

82518003

SNOMED

virus

214

MERS-CoV

697932005

SNOMED

virus

1

1

215

Machupo virus

71489006

SNOMED

virus

1

1

216

Madurella

23009007

SNOMED

fungi

217

Malassezia pachydermatis

51257000

SNOMED

fungi

218

Measles morbillivirus

52584002

SNOMED

virus

1

1

219

Metapneumovirus

407501006

SNOMED

virus

220

Methicillin resistant Staphylococcus aureus (MRSA)

115329001

SNOMED

bacteria

221

Methicillin susceptible Staphylococcus aureus (MSSA)

417943000

SNOMED

bacteria

222

Meyerozyma guilliermondii

29812000

SNOMED

fungi

223

Micrococcus

52864008

SNOMED

bacteria

224

Micrococcus luteus

48299003

SNOMED

bacteria

225

Microsporidia

418382009

SNOMED

parasite, protozoa

226

Microsporum

11983001

SNOMED

fungi

227

Middle East Respiratory Syndrome Coronavirus

697932005

SNOMED

virus

228

Mirabilis

79589007

SNOMED

bacteria

229

Moraxella

36361003

SNOMED

bacteria

230

Moraxella catarrhalis

24226003

SNOMED

bacteria

231

Morganella

50713005

SNOMED

bacteria

232

Morganella morganii

243301005

SNOMED

bacteria

233

Mpox virus

59774002

SNOMED

virus

1

1

1

234

Mucor

49782006

SNOMED

fungi

235

Mumps virus

50384007

SNOMED

virus

1

236

Mycobacterium

243368001

SNOMED

bacteria

237

Mycobacterium leprae

58242002

SNOMED

bacteria

238

Mycobacterium tuberculosis

113861009

SNOMED

bacteria

239

Mycobacterium, non-tuberculosis

110379001

SNOMED

bacteria

240

Mycoplasma agalactiae

16377009

SNOMED

bacteria

241

Mycoplasma pneumoniae

58720004

SNOMED

bacteria

242

Necator americanus

43905006

SNOMED

parasite, helminth

243

Neisseria meningitidis

17872004

SNOMED

bacteria

1

244

Neotestudina rosatii (Zopfia rosatii)

47066009

SNOMED

fungi

245

Nipah virus

115511007

SNOMED

virus

1

246

Nocardia asteroides

30092002

SNOMED

bacteria

247

Nocardia brasiliensis

58970008

SNOMED

bacteria

248

Norovirus

407359000

SNOMED

virus

249

Onchocerca volvulus

52397001

SNOMED

parasite, helminth

250

Orthomyxoviridae (influenza viruses)

55014007

SNOMED

virus

251

Papillomavirus

243584004

SNOMED

virus

252

Papoviridae

243587006

SNOMED

virus

253

Paracoccidioides

112405000

SNOMED

fungi

254

Paragonimus westermani

58412002

SNOMED

parasite, helminth

255

Paramyxoviridae

128354001

SNOMED

virus

256

Parvoviridae

243587006

SNOMED

virus

257

Penicillium

42993004

SNOMED

fungi

258

Pichia kudriavzeveii

16452009

SNOMED

fungi

259

Picornaviridae

407344006

SNOMED

virus

260

Plasmodium

34706006

SNOMED

parasite, protozoa

261

Plasmodium falciparum

30020004

SNOMED

parasite, protozoa

1

1

262

Plasmodium malariae

56395006

SNOMED

parasite, protozoa

1

263

Plasmodium ovale

18508006

SNOMED

parasite, protozoa

1

264

Plasmodium vivax

74746009

SNOMED

parasite, protozoa

1

1

265

Pneumocystis

115987006

SNOMED

fungi

266

Pneumocystis jirovecii

79909001

SNOMED

fungi

1

267

Prion diseases

20484008

SNOMED

Prions

1

268

Propionibacterium

34844008

SNOMED

bacteria

269

Propionibacterium acnes

39473003

SNOMED

bacteria

270

Proteus

50517009

SNOMED

bacteria

271

Proteus mirabilis

73457008

SNOMED

bacteria

272

Proteus vulgaris

45834001

SNOMED

bacteria

273

Providencia rettgeri

14196002

SNOMED

bacteria

274

Providencia stuartii

1445008

SNOMED

bacteria

275

Pseudomonas

57032008

SNOMED

bacteria

1

276

Pseudomonas aeruginosa

52499004

SNOMED

bacteria

277

Pseudomonas fluorescens

39289003

SNOMED

bacteria

278

Pseudomonas putida

68608003

SNOMED

bacteria

279

Rabies virus

59881000

SNOMED

virus

1

280

Raoultella

417468005

SNOMED

bacteria

281

Raoultella ornithinolytica

416832000

SNOMED

bacteria

282

Raoultella planticola

416264004

SNOMED

bacteria

283

Respiratory Syncytial Virus (RSV)

6415009

SNOMED

virus

1

284

Retroviridae

77622001

SNOMED

virus

1

285

Rhabdoviridae

407326003

SNOMED

virus

286

Rhizomucor

85711000

SNOMED

fungi

287

Rhizopus

17683005

SNOMED

fungi

288

Rift Valley fever virus

28335002

SNOMED

virus

1

1

289

Ross River virus

32458000

SNOMED

virus

290

Rotavirus

417542000

SNOMED

virus

291

Rubella virus

5210005

SNOMED

virus

292

SARS-CoV-2

840533007

SNOMED

virus

1

1

1

1

293

SARS-CoV-2 Beta - B.1.351

840533008

SNOMED

virus

294

SARS-CoV-2 Delta - B.1.617.2

840533009

SNOMED

virus

295

SARS-CoV-2 Eta - B.1.525

840533010

SNOMED

virus

296

SARS-CoV-2 Gamma - P.1

840533011

SNOMED

virus

297

SARS-CoV-2 Iota - B.1.526

840533012

SNOMED

virus

298

SARS-CoV-2 Kappa - B.1.617.1

840533013

SNOMED

virus

299

SARS-CoV-2 Omicron

840533014

SNOMED

virus

300

SARS-CoV-2 Omicron - B.1.1.529

840533015

SNOMED

virus

301

SARS-CoV-2 Omicron - B.1.1.529.2 BA.2

840533016

SNOMED

virus

302

SARS-CoV-2 Omicron - B.1.1.529.5 BA.5

840533017

SNOMED

virus

303

SARS-CoV-2 Theta- P.3

840533018

SNOMED

virus

304

SARS-CoV-2 Zeta - P.2

840533019

SNOMED

virus

305

SARS-CoV-2 Alpha - B.1.1.7

840533020

SNOMED

virus

306

SARS-CoV-2 Antigen

840536004

SNOMED

virus (substance)

307

SARS-CoV-2 IgG Antibody

6.3E+13

SNOMED

virus (substance)

308

SARS-CoV-2 IgG/IgM Antibody

840535000

SNOMED

virus (substance)

309

SARS-CoV-2 IgM Antibody

5.06E+13

SNOMED

virus (substance)

310

Saccharomyces cerevisiae

765320007

SNOMED

fungi

311

Salmonella

27268008

SNOMED

bacteria

312

Salmonella hirschfeldii

32488009

SNOMED

bacteria

313

Sapovirus

407362002

SNOMED

virus

314

Scedosporium

31901009

SNOMED

fungi

315

Schistosoma

53583001

SNOMED

parasite, helminth

316

Schistosoma guineensis

parasite, helminth

317

Schistosoma haematobium

3294004

SNOMED

parasite, helminth

318

Schistosoma intercalatum

15685002

SNOMED

parasite, helminth

319

Schistosoma japonicum

5249008

SNOMED

parasite, helminth

320

Schistosoma mansoni

11168007

SNOMED

parasite, helminth

321

Schistosoma mekongi

75475007

SNOMED

parasite, helminth

322

Serratia

42025004

SNOMED

bacteria

323

Serratia liquefaciens

23787004

SNOMED

bacteria

324

Serratia marcescens

33522002

SNOMED

bacteria

325

Serratia ureilytica

450416004

SNOMED

bacteria

326

Severe Acute Respiratory Syndrome Coronavirus 2

1240000000000000.0

SNOMED

virus

327

Severe Acute Respiratory Syndrome-Related Coronavirus

415360003

SNOMED

virus

328

SFTS virus

722401001

SNOMED

virus

1

329

Shigella

77352002

SNOMED

bacteria

330

Shigella boydii

55462008

SNOMED

bacteria

331

Shigella dysenteriae

43612004

SNOMED

bacteria

332

Shigella flexneri

85729005

SNOMED

bacteria

333

Shigella sonnei

4298009

SNOMED

bacteria

334

Simplexvirus (Genus)

314797000

SNOMED

virus

335

Sphingomonas paucimobilis

243350004

SNOMED

bacteria

336

Sporothrix schenckii

32662000

SNOMED

fungi

337

Staphylococcus

65119002

SNOMED

bacteria

1

338

Staphylococcus aureus

3092008

SNOMED

bacteria

339

Staphylococcus capitis

40347003

SNOMED

bacteria

340

Staphylococcus caprae

76969000

SNOMED

bacteria

341

Staphylococcus cohnii

66872005

SNOMED

bacteria

342

Staphylococcus epidermidis

60875001

SNOMED

bacteria

343

Staphylococcus haemolyticus

83452006

SNOMED

bacteria

344

Staphylococcus hominis

44827007

SNOMED

bacteria

345

Staphylococcus hominis hominis

432505008

SNOMED

bacteria

346

Staphylococcus lugdunensis

103494005

SNOMED

bacteria

347

Staphylococcus pettenkoferi

428731005

SNOMED

bacteria

348

Staphylococcus saprophyticus

19743000

SNOMED

bacteria

349

Staphylococcus simulans

52122005

SNOMED

bacteria

350

Staphylococcus warneri

63550006

SNOMED

bacteria

351

Stenotrophomonas

115656007

SNOMED

bacteria

352

Stenotrophomonas maltophilia

113697002

SNOMED

bacteria

353

Streptococcus

58800005

SNOMED

bacteria

1

354

Streptococcus alpha-hemolytic

60631002

SNOMED

bacteria

355

Streptococcus anginosus

44304009

SNOMED

bacteria

356

Streptococcus anginosus group

415597009

SNOMED

bacteria

357

Streptococcus beta-hemolytic

53490009

SNOMED

bacteria

358

Streptococcus constellatus

76199005

SNOMED

bacteria

359

Streptococcus dysgalactiae

40812000

SNOMED

bacteria

360

Streptococcus gallolyticus

113985000

SNOMED

bacteria

361

Streptococcus intermedius

62170002

SNOMED

bacteria

362

Streptococcus mitis

57997003

SNOMED

bacteria

363

Streptococcus oralis

19870004

SNOMED

bacteria

364

Streptococcus parasanguinis

113990002

SNOMED

bacteria

365

Streptococcus pneumoniae

9861002

SNOMED

bacteria

366

Streptococcus pyogenes

80166006

SNOMED

bacteria

367

Streptococcus salivarius

39888004

SNOMED

bacteria

368

Streptococcus sanguinis

113993000

SNOMED

bacteria

369

Streptococcus viridans

31703004

SNOMED

bacteria

370

Streptococcus viridans group

31703004

SNOMED

bacteria

371

Strongyloides stercoralis

42625000

SNOMED

parasite, helminth

372

Taenia saginata

61085008

SNOMED

parasite, helminth

373

Taenia solium

17966003

SNOMED

parasite, helminth

374

Talaromyces marneffei

71825007

SNOMED

fungi

375

Togoviridae

129231002

SNOMED

virus

376

Toxocara canis

88857009

SNOMED

parasite, helminth

377

Toxoplasma

61949005

SNOMED

parasite, protozoa

378

Toxoplasma gondii

4649006

SNOMED

parasite, protozoa

1

379

Trichinella spiralis

16439004

SNOMED

parasite, helminth

380

Trichomonas

3764006

SNOMED

parasite, protozoa

381

Trichomonas vaginalis

22417000

SNOMED

parasite, protozoa

382

Trichophyton

88578003

SNOMED

fungi

383

Trichosporon asahii

243475001

SNOMED

fungi

384

Trichuris trichiura

5378007

SNOMED

parasite, helminth

385

Trypanosoma

40740003

SNOMED

parasite, protozoa

386

Trypanosoma brucei gambiense

20027006

SNOMED

parasite, protozoa

387

Trypanosoma brucei rhodesiense

79513002

SNOMED

parasite, protozoa

388

Trypanosoma cruzi

88274000

SNOMED

parasite, protozoa

389

Vancomycin resistant Enterococcus (VRE)

113727004

SNOMED

bacteria

390

Vibrio cholerae

75953000

SNOMED

bacteria

391

Vibrio parahaemolyticus

11736008

SNOMED

bacteria

392

Vibrio vulnificus

55905000

SNOMED

bacteria

393

West Nile virus

57311007

SNOMED

virus

1

1

394

Wuchereria bancrofti

84925004

SNOMED

parasite, helminth

395

Yeast

62093005

SNOMED

fungi

396

Yersinia pestis

54365000

SNOMED

bacteria

397

Zika virus

50471002

SNOMED

virus

1

1

1

398

Chikungunya virus

virus

1

1

399

Oropouche virus

virus

1

400

Zaire ebolavirus (ZEBOV)

425092008

SNOMED

virus

1

401

Sudan ebolavirus (SUDV)

424116003

SNOMED

virus

1

402

Reston ebolavirus (RESTV)

422448009

SNOMED

virus

1

403

Taï Forest ebolavirus (TAFV)

SNOMED

virus

1

404

Bundibugyo ebolavirus (BDBV)

450597006

SNOMED

virus

1

405

Dengue virus, type 1

60588009

SNOMED

virus

406

Dengue virus, type 2

41328007

SNOMED

virus

407

Dengue virus, type 3

8467002

SNOMED

virus

408

Dengue virus, type 4

36700002

SNOMED

virus

409

Tick-borne encephalitis (TBE) virus

32323003

SNOMED

virus

410

Yellow fever virus

26630006

SNOMED

virus

1

411